strataG (version 1.0.5)

write.arlequin: Write Arlequin Input Files

Description

Create an Arlequin-formatted input file from a gtypes object.

Usage

.writeArlequinHeader(g, file)
.writeArlequinSequences(st, file, locus)
.writeArlequinMsats(st, file)
.writeArlequinStructure(g, file, data.type)
write.arlequin(g, label = NULL, locus = 1)

Arguments

g

a gtypes object.

locus

numeric or character designation of which locus to write for haploid data.

label

label for Arlequin project filename (.arp). If NULL, the gtypes description is used if present.

References

Excoffier, L.G. Laval, and S. Schneider (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50. Available at http://cmpg.unibe.ch/software/arlequin3/