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strataG (version 2.4.905)

maverickRun: Run MavericK

Description

Run MavericK clustering algorithm

Usage

maverickRun(
  g,
  params = NULL,
  label = "MavericK_files",
  data_fname = "data.txt",
  param_fname = "parameters.txt",
  exec = "Maverick1.0.5"
)

Arguments

g

a '>gtypes object.

params

a list specifying parameters for MavericK. All parameters are available and can be specified by partial matching. The function will automatically specify parameters related to data formatting (data, headerRow_on, missingData, ploidy, ploidyCol_on, popCol_on), so those will be ignored. For a full list of available parameters and their definitions, see the MavericK documentation distributed with the program.

label

folder where input and output files will be written to.

data_fname

file name of data input file.

param_fname

file name of parameters file.

exec

name of executable for MavericK.

References

Robert Verity and Richard Nichols. (2016) Estimating the number of subpopulations (K) in structured populations. Genetics Robert Verity and Richard Nichols. (2016) Documentation for MavericK software: Version 1.0