Read and write MEGA formatted files.
read.mega(file)write.mega(
g,
file = NULL,
label = NULL,
line.width = 60,
locus = 1,
as.haplotypes = TRUE
)
a MEGA-formatted file of sequences.
label for MEGA filename (.meg). If NULL, the
gtypes description is used if present.
width of sequence lines.
number or name of locus to write.
output sequences as haplotypes? If TRUE, contents
of @sequences slot are returned - treated as if they were
haplotypes. If FALSE, one sequence per individual is returned.
for read.mega, a list of:
title of MEGA file
DNA sequences in DNAbin format
Sudhir Kumar, Glen Stecher, and Koichiro Tamura (2015) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0. Molecular Biology and Evolution (submitted). Available at: http://www.megasoftware.net