strvalidator (version 0.1)

modelDropout: model drop-out events

Description

modelDropout model probability of dropout and plots a graph.

Usage

modelDropout(data, plotPI = TRUE, conf = 0.95, xmin = NA,
    xmax = NA, ymin = 0, ymax = 1, col.line = 1,
    col.conf = 3)

Arguments

data

data frame in GeneMapper format containing at least a column 'Allele'.

plotPI

logical. TRUE if prediction intervals should be plotted with the given confidence limit 'conf'.

conf

numerical specifying confidence limit for the prediction interval.

xmin

numerical setting for the x axis.in the plot.

xmax

numerical setting for the x axis.in the plot.

ymin

numerical setting for the y axis.in the plot.

ymax

numerical setting for the y axis.in the plot.

col.line

value setting the line color of the prediction.

col.conf

value setting the line color of the prediction interval.

Details

Models the probability of dropout P(D) using logistic regression logit P(P;H) = B0 + B1*log(H), where 'H' is the peak height. Produce a plot showing the model prediction, optionally with given prediction interval. Parameters 'xmin', 'ymin', and 'ymax' affect the plot, and 'col.line' and 'col.conf' is the colour of the prediction line and prediction interval lines respectively.