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strvalidator (version 1.4.0)

Process Control And Internal Validation Of Forensic STR Kits

Description

strvalidator is an open source platform for validation and process control. It provide tools to analyse data from internal validation of forensic short tandem repeat (STR) kits. The tools are developed to provide the necessary data to conform with the ENFSI guidelines for internal validation. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

368

Version

1.4.0

License

GPL-2

Maintainer

Oskar Hansson

Last Published

January 6th, 2015

Functions in strvalidator (1.4.0)

addSize_gui

Add size
plotCapillary_gui

Plot Capillary Balance
ref1

ESX17 Positive Control Profile
sortMarker

Sort markers
tableStutter_gui

Table Stutter
addMarker_gui

Add missing markers
trim

Trim data
addMarker

Add missing markers.
calculateBalance_gui

Calculate Balance
calculateOL_gui

Analyse off-ladder alleles
calculateCapillary_gui

Capillary balance
calculateHeight_gui

Calculate peak height
calculateResultType_gui

Calculate Result Type
loadPackage

Load packages
plotStutter_gui

Plot Stutter
ref52

ESX17 example data for mixture analysis.
checkDataset

Plot Stutter GUI
set3

ESX17 example data for dropout analysis.
tablePrecision

Calculate precision
addData_gui

Add data
calculateDropout

Calculate drop-out events
combineBinsAndPanels

combine bins and panels files.
calculateOverlap_gui

Bins Overlap
calculateMixture

Calculate mixture.
addSize

Add size information.
set2

SGMPlus example data
addColor

Add color information.
calculateMixture_gui

Calculate Mixture
calculateHeterozygous_gui

Calculate Heterozygous
calculateConcordance

Calculate concordance.
colNames

colNames
tablePrecision_gui

Calculate Precision
calculatePullup

Calculate Pull-up
calculateOverlap

Bins Overlap
addDye_gui

Add dye information
addData

Adds new data columns to a data frame
set5

ESX17 example data for mixture analysis.
filterProfile_gui

Filter Profile
detectKit

Detect kit
plotBalance_gui

Plot Balance
getDb

Get allele frequency database
export_gui

Export objects
checkSubset

check subset
calculateResultType

Calculate result type
generateEPG_gui

Generate EPG
calculatePeaks_gui

Calculate peaks
combine_gui

Combine two datasets
plotPrecision_gui

Plot Precision
tableBalance_gui

Table balance
tableStutter

Table stutter
editData_gui

Edit or view data frames
calculateOL

Off-ladder risk
calculateConcordance_gui

Calculate Concordance
compact

Compact
calculateBalance

Calculate balance
calculateDropout_gui

Calculate Dropout
set1

Typing data in 'GeneMapper' format
calculatePullup_gui

Calculate Spectral Pull-Up
cropData_gui

Crop or replace
calculateHeterozygous

Calculate heterozygous loci
ggsave_gui

Save image
calculateCapillary

Calculate capillary balance
calculateHeight

Calculate peak height.
getKit

Get kit
import_gui

Import from text file
listObjects

List objects
plotResultType_gui

Plot Result Type
plotPeaks_gui

Plot Peaks
saveObject

Save object
import

Import GeneMapper.
calculateStutter_gui

Calculate Stutters
ref51

ESX17 example data for mixture analysis.
plotPullup_gui

Plot Pull-up
checkSubset_gui

Check subsetting of a dataset
plotDistribution_gui

Plot Distribution
slim_gui

Slim data frames
export

Export
ref2

SGMPlus example data
heightToPeak

Height to peak.
tableCapillary_gui

Table Capillary
guessProfile_gui

Guess profile
ref3

ESX17 example data for dropout analysis.
makeKit_gui

Make kit
readBinsFile

Read Bins file
strvalidator

Graphical user interface for the STR-validator package
modelDropout_gui

model and plot drop-out events
set4

ESX17 example data for dropout analysis.
slim

Slim data frames
trim_gui

Trim data
strValidator-package

Simplifies internal validation of forensic STR typing kits
tableCapillary

Table capillary
filterProfile

Filter out profiles from DNA results
tableBalance

Table stutter
calculatePeaks

Count peaks
generateEPG

Generate EPG
calculateStutter

Calculate stutter
plotDropout_gui

Plot Dropout
ref4

ESX17 example data for dropout analysis.
readPanelsFile

Read Panels file
guessProfile

Guess Profile
plotKit_gui

Plot kit marker ranges
ref11

ESX17 Positive Control Profile