strvalidator (version 2.4.1)

plotEPG2: plotEPG2

Description

EPG data visualizer (interactive)

Usage

plotEPG2(
  mixData,
  kit,
  refData = NULL,
  AT = NULL,
  ST = NULL,
  dyeYmax = TRUE,
  plotRepsOnly = TRUE,
  options = NULL
)

Value

sub A plotly widget

Arguments

mixData

List of mixData[[ss]][[loc]] =list(adata,hdata), with samplenames ss, loci names loc, allele vector adata (can be strings or numeric), intensity vector hdata (must be numeric)

kit

Short name of kit: See supported kits with getKit()

refData

List of refData[[rr]][[loc]] or refData[[loc]][[rr]] to label references (flexible). Visualizer will show dropout alleles.

AT

A detection threshold can be shown in a dashed line in the plot (constant). Possibly a vector with locus column names

ST

A stochastic threshold can be shown in a dashed line in the plot (constant). Possibly a vector with locus column names

dyeYmax

Whether Y-axis should be same for all markers (FALSE) or not (TRUE this is default)

plotRepsOnly

Whether only replicate-plot is shown in case of multiple samples (TRUE is default)

options

A list of possible plot configurations. See comments below

Author

Oyvind Bleka

Details

Plots peak height with corresponding allele for sample(s) for a given kit.