BiclustSet

BiclustSet-class

show,BiclustSet-method

summary,BiclustSet-method

BiclustSet Class contains the biclustering result in a form: bicluster rows and bicluster columns

Biclusters are submatrices in the data matrix which
satisfy certain conditions of homogeneity. Package contains
functions for generating robust biclusters with respect to the
initialization parameters for a given bicluster solution
contained in a bicluster set in data, the procedure is also
known as ensemble biclustering. The set of biclusters is
evaluated based on the similarity of its elements (the
overlap), and afterwards the hierarchical tree is constructed
to obtain cut-off points for the classes of robust biclusters.
The result is a number of robust (or super) biclusters with
none or low overlap.

Tatsiana Khamiakova

superbiclust

Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)

BiclustSet-class function

Objects can be created by calls of the form <code>new("BiclustSet", ...)</code>. 
The variety of inputs variety of inputs (isa2, fabia, biclust,...) can be used.

Objects from the Class

<dl class="dl-horizontal">
 <dt><code>GenesMembership</code>:</dt><dd>logical, object of class <code>"matrix"</code>, with row membership within a bicluster</dd>
 <dt><code>ColumnMembership</code>:</dt><dd>logical, object of class <code>"matrix"</code>, with column membership within a bicluster</dd>
 <dt><code>Number</code>:</dt><dd>code"numeric", number of biclusters in the set</dd>
 </dl>

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Class <code>BiclustSet</code> — BiclustSet-class

<dl class='dl-horizontal'>
 <dt><code>GenesMembership</code>:</dt><dd>logical, object of class <code>"matrix"</code>, with row membership within a bicluster</dd>
 <dt><code>ColumnMembership</code>:</dt><dd>logical, object of class <code>"matrix"</code>, with column membership within a bicluster</dd>
 <dt><code>Number</code>:</dt><dd>code"numeric", number of biclusters in the set</dd>
 </dl>

BiclustSet-class: Class `BiclustSet`

Description

Arguments

Objects from the Class

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