getBranchTimes

Extracts the time from root of each node in an <code>ouchtree</code> or <code>hansentree</code> formatted phylogenetic tree; used to compute the timing of regime shifts in a Hansen model

manip

This data-driven phylogenetic comparative method fits stabilizing selection models to continuous trait data, building on the 'ouch' methodology of Butler and King (2004) <doi:10.1086/426002>. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak. For more information see Ingram and Mahler (2013) <doi:10.1111/2041-210X.12034>.

Travis Ingram

surface

Fitting Hansen Models to Investigate Convergent Evolution

getBranchTimes function

<dl> <dt>h</dt>
<dd>Fitted <code>ouchtree</code> or <code>hansentree</code> object</dd></dl>

Arguments

Author

Extract Branching Times from an ouch Tree — getBranchTimes

<dl>

 <dt>h</dt>
<dd>Fitted <code>ouchtree</code> or <code>hansentree</code> object</dd>

</dl>

getBranchTimes: Extract Branching Times from an `ouch` Tree

Description

Usage

Value

Arguments

Author

References

Examples