survAUC (version 1.3-0)

plot.survAUC: Plot method for survAUC and survErr Objects

Description

Plot a survAUC object generated by the functions AUC.uno, AUC.sh, AUC.cd, AUC.hc and predErr.

Usage

# S3 method for survAUC
plot(x, col="red", type="l", ylim=c(0,1),
        xlab="Time",ylab="AUC", 
        main="Time-dependent AUC", add=FALSE, ...)
# S3 method for survErr
plot(x, col="red", type="l", ylim=c(0,1),
        xlab="Time",ylab="Prediction error", 
        main="Time-dependent Prediction Error", add=FALSE, ...)

Arguments

x

An object of class survAUC.

col

The color used to draw the AUC curve.

type

The type of plot to be drawn. See argument 'type' of the plot function.

ylim

The y limits of the plot.

xlab

The title of the x axis. See title.

ylab

The title of the y axis. See title.

main

The main title of the plot. See title.

add

A logical specifying whether the AUC-Curve should be added to an already existing plot.

...

Graphics parameters that can be passed to 'plot'.

See Also

AUC.sh, AUC.cd, AUC.hc, AUC.uno, predErr

Examples

data(cancer,package="survival")
TR <- ovarian[1:16,]
TE <- ovarian[17:26,]
train.fit  <- survival::coxph(survival::Surv(futime, fustat) ~ age,
                    x=TRUE, y=TRUE, method="breslow", data=TR)

lp <- predict(train.fit)
lpnew <- predict(train.fit, newdata=TE)
Surv.rsp <- survival::Surv(TR$futime, TR$fustat)
Surv.rsp.new <- survival::Surv(TE$futime, TE$fustat)
times <- seq(10, 600, 10)                  

AUC_sh <- AUC.sh(Surv.rsp, Surv.rsp.new, lp, lpnew, times)
plot(AUC_sh)
abline(h = 0.5)

BrierScore <- predErr(Surv.rsp, Surv.rsp.new, lp, lpnew, times, 
                      type = "brier", int.type = "weighted")
plot(BrierScore)
abline(h = 0.25)