singletonMetabolites

singletonMetabolites-methods

singletonMetabolites,modelorg-method

An object of class <code><a href="/link/?package=sybil&version=2.0.0" modelorg'="" data-mini-rdoc="sybil::"></a>'>modelorg</code>.

object

A numeric tolerance value: an entry of the stoichiometric matrix \(s_ij\)
 is considered to be non-zero if \(abs(s_ij) &gt; tol\) is <code>TRUE</code>.
 Default: <code>SYBIL_SETTINGS("TOLERANCE")</code>.

Boolean. If set to <code>TRUE</code>, a list containing metabolite id's will be
 returned, otherwise a list of logical vectors.
 Default: <code>TRUE</code>.

retIds

Search a metabolic network for metabolites, which appear only once in the
 stoichiometric matrix.

methods

This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages.

Claus Jonathan Fritzemeier

sybil

Efficient Constrained Based Modelling in R

singletonMetabolites-methods function

<dl class="dl-horizontal">
 <dt><code>signature(object = "modelorg")</code></dt><dd>method to use with class <code><a href="/link/?package=sybil&version=2.0.0" modelorg'="" data-mini-rdoc="sybil::"></a>'>modelorg</code>.</dd>
 </dl>

Methods

An object of class <code><a href='<a href='modelorg'></a>'>modelorg</a></code>.

Identify Singleton Metabolites — singletonMetabolites-methods

<dl class='dl-horizontal'>
 <dt><code>signature(object = "modelorg")</code></dt><dd>method to use with class <code><a href='<a href='modelorg'></a>'>modelorg</a></code>.</dd>
 </dl>

singletonMetabolites-methods: Identify Singleton Metabolites

Description

Usage

Arguments

Value

Methods

See Also