The following functions are now defunct (no longer available):
All COL functions are defunct: as.colid, col_children, col_classification, col_downstream, col_search, get_colid, get_colid_, as.data.frame.colid, children.colid, classification.colid, downstream.colid, id2name.colid, lowest_common.colid, synonyms.colid, upstream.colid`
col_classification(): Seeclassification()
tp_classification(): Seeclassification()
eol_hierarchy(): Seeclassification()
eol_invasive(): See eol in the originr package.
use_eol(): EOL no longer requires an API key
tpl_search(): Use the Taxonstand functions TPL or TPLck directly.
get_seqs(): This function changed name toncbi_getbyname()()].
get_genes(): This function changed name toncbi_getbyid()()].
get_genes_avail(): This function changed name toncbi_search()()].
ncbi_getbyname(): See ncbi_byname in the traits package.
ncbi_getbyid(): See ncbi_byid in the traits package.
ncbi_search(): See ncbi_searcher in the traits package.
gisd_isinvasive(): See gisd in the originr package.
ubio_classification(): The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_classification_search(): The uBio web services was down for quite
a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up
and available.
ubio_id(): The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_ping(): The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_search(): The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_synonyms(): The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
get_ubioid(): The uBio web services are apparently down indefinitely.
phylomatic_tree(): This function is defunct. See
phylomatic in the package brranching
phylomatic_format(): This function is defunct. See
phylomatic_names in the package brranching
iucn_summary_id(): This function is defunct. Use iucn_summary()
eubon(): This function is defunct. Use eubon_search()
tnrs(): This function is defunct. Was too unreliable
tnrs_sources(): This function is defunct. Was too unreliable