taxize (version 0.9.4)

ipni_search: Search for names in the International Plant Names Index (IPNI).

Description

Note: This data source is also provided in the Global Names Index (GNI) (http://gni.globalnames.org/data_sources). The interface to the data is different among the two services though.

Usage

ipni_search(family = NULL, infrafamily = NULL, genus = NULL,
  infragenus = NULL, species = NULL, infraspecies = NULL,
  publicationtitle = NULL, authorabbrev = NULL,
  includepublicationauthors = NULL, includebasionymauthors = NULL,
  geounit = NULL, addedsince = NULL, modifiedsince = NULL,
  isapnirecord = NULL, isgcirecord = NULL, isikrecord = NULL,
  ranktoreturn = NULL, output = "minimal", ...)

Arguments

family

Family name to search on (Optional)

infrafamily

Infrafamilial name to search on (Optional)

genus

Genus name to search on (Optional)

infragenus

Infrageneric name to search on (Optional)

species

Species name to search on (Optional) - Note, this is the epithet, not the full genus - epithet name combination.

infraspecies

Infraspecies name to search on (Optional)

publicationtitle

Publication name or abbreviation to search on. Again, replace any spaces with a '+' (e.g. 'J.+Bot.') (Optional)

authorabbrev

Author standard form to search on (publishing author, basionym author or both - see below) (Optional)

includepublicationauthors

TRUE (default) to include the taxon author in the search or FALSE to exclude it

includebasionymauthors

TRUE (default) to include the basionum author in the search or FALSE to exclude it

geounit

Country name or other geographical unit to search on (see the help pages for more information and warnings about the use of this option) (Optional)

addedsince

Date to search on in the format 'yyyy-mm-dd', e.g. 2005-08-01 for all records added since the first of August, 2005. (see the help pages for more information and warnings about the use of this option) (Optional. If supplied must be in format YYYY-MM-DD and must be greater than or equal to 1984-01-01.)

modifiedsince

Date to search on in the format 'yyyy-mm-dd', e.g. 2005-08-01 for all records edited since the first of August, 2005. (See the help pages for more information about the use of this option) (Optional. If supplied must be in format YYYY-MM-DD and must be greater than or equal to 1993-01-01.)

isapnirecord

FALSE (default) to exclude records from the Australian Plant Name Index

isgcirecord

FALSE (default) to exclude records from the Gray Cards Index

isikrecord

FALSE (default) to exclude records from the Index Kewensis

ranktoreturn

One of a few options to choose the ranks returned. See details.

output

One of minimal (default), classic, short, or extended

...

Curl options passed on to GET (Optional). Default: returns all ranks.

Value

A data frame

Details

rankToReturn options:

• "all" - all records

• "fam" - family records

• "infrafam" - infrafamilial records

• "gen" - generic records

• "infragen" - infrageneric records

• "spec" - species records

• "infraspec" - infraspecific records

References

http://www.ipni.org/link_to_ipni.html

Examples

# NOT RUN {
ipni_search(genus='Brintonia', isapnirecord=TRUE, isgcirecord=TRUE, isikrecord=TRUE)
head(ipni_search(genus='Ceanothus'))
head(ipni_search(genus='Pinus', species='contorta'))

# Different output formats
head(ipni_search(genus='Ceanothus'))
head(ipni_search(genus='Ceanothus', output='short'))
head(ipni_search(genus='Ceanothus', output='extended'))
# }