The following functions are now defunct (no longer available):
tpl_search: Use the Taxonstand functions
TPL or TPLck directly.
get_seqs: This function changed name to ncbi_getbyname.
get_genes: This function changed name to ncbi_getbyid.
get_genes_avail: This function changed name to ncbi_search.
ncbi_getbyname: See ncbi_byname in the traits package.
ncbi_getbyid: See ncbi_byid in the traits package.
ncbi_search: See ncbi_searcher in the traits package.
eol_invasive: See eol in the originr package.
gisd_isinvasive: See gisd in the originr package.
ubio_classification: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_classification_search: The uBio web services was down for quite
a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up
and available.
ubio_id: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_ping: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_search: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
ubio_synonyms: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
get_ubioid: The uBio web services are apparently down indefinitely.
phylomatic_tree: This function is defunct. See
phylomatic in the package brranching
phylomatic_format: This function is defunct. See
phylomatic_names in the package brranching