topoSort

Combine multiple sorted vectors into a single vector assuming there are no cycles or weird topologies. Where a global position is ambiguous, the result is placed arbitrarily.

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.

Scott Sherrill-Mix

taxonomizr

Functions to Work with NCBI Accessions and Taxonomy

topoSort function

<dl><dt>vectors</dt>
<dd>A list of vectors each vector containing sorted elements to be merged into a global sorted vector</dd>
<dt>maxIter</dt>
<dd>An integer specifying the maximum number of iterations before bailing out. This should be unnecessary and is just a safety feature in case of some unexpected input or bug.</dd>
<dt>errorIfAmbiguous</dt>
<dd>If TRUE then error if any ambiguities arise</dd></dl>

Arguments

Combine multiple sorted vectors into a single sorted vector — topoSort

<dl>

<dt>vectors</dt>
<dd>A list of vectors each vector containing sorted elements to be merged into a global sorted vector</dd>


<dt>maxIter</dt>
<dd>An integer specifying the maximum number of iterations before bailing out. This should be unnecessary and is just a safety feature in case of some unexpected input or bug.</dd>


<dt>errorIfAmbiguous</dt>
<dd>If TRUE then error if any ambiguities arise</dd>

</dl>

topoSort: Combine multiple sorted vectors into a single sorted vector

Description

Usage

Value

Arguments

See Also

Examples