- article_dir
path to the directory which contains tex article
- web_dir
option to create a new web directory, default TRUE
- interactive_mode
interactive mode for converting articles with options. default FALSE
- output_format
knit output type for the RMarkdown file, options for "bookdown", "biocstyle", "litedown"
- autonumber_eq
whether to autonumber the equations, default is FALSE
- autonumber_sec
whether to autonumber the sections, default is TRUE
- algorithm_render
Enable to include algorithms with pseudocode.js, default is FALSE optional is TRUE