A topics or functions object generated by <code><a rd-options="" href="/link/find_topics?package=themetagenomics&version=1.0.2" data-mini-rdoc="themetagenomics::find_topics">find_topics</a></code> or <code><a rd-options="" href="/link/predict?package=themetagenomics&version=1.0.2" data-mini-rdoc="themetagenomics::predict">predict</a></code>, respectively.

object

Estimate topic or function effects

A means to explore the structure of 16S rRNA surveys using a Structural
Topic Model coupled with functional prediction. The user provides an abundance
table, sample metadata, and taxonomy information, and themetagenomics infers
associations between topics and sample features, as well as topics and predicted
functional content. Functional prediction can be accomplished via Tax4Fun (for
Silva references) and PICRUSt (for GreenGeenes references). See
<doi:10.1371/journal.pone.0219235>.

Stephen Woloszynek

themetagenomics

Exploring Thematic Structure and Predicted Functionality of 16s
rRNA Amplicon Data

est function

A topics or functions object generated by <code><a rd-options='' href='find_topics'>find_topics</a></code> or <code><a rd-options='' href='predict'>predict</a></code>, respectively.

est: Estimate topic or function effects

Description

Usage

Arguments

See Also