add_point

add_point,InputHeatmap-method

add_point() from a `InputHeatmap` object, adds a point annotation layer.

This is a tidy implementation for heatmap.  At the
moment it is based on the (great) package 'ComplexHeatmap'.  The goal
of this package is to interface a tidy data frame with this powerful
tool.  Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names).  Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...).  Labels size
adjusted by row and column total number.  Default use of Brewer and
Viridis palettes.

Stefano Mangiola

tidyHeatmap

A Tidy Implementation of Heatmap

Anthony Papenfuss

add_point function

<dl><dt>.data</dt>
<dd>A `tbl_df` formatted as | &lt;ELEMENT&gt; | &lt;FEATURE&gt; | &lt;VALUE&gt; | &lt;...&gt; |</dd>
<dt>.column</dt>
<dd>Vector of quotes</dd>
<dt>palette</dt>
<dd>A character vector of colors, or a function such as colorRamp2 (see examples).</dd>
<dt>size</dt>
<dd>A grid::unit object, e.g. unit(2, "cm"). This is the height or width of the annotation depending on the orientation.</dd>
<dt>...</dt>
<dd>The arguments that will be passed to top_annotation or left_annotation of the ComplexHeatmap container</dd></dl>

Arguments

DEPRECATED. Adds a point annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` — add_point

<dl>

<dt>.data</dt>
<dd>A `tbl_df` formatted as | &lt;ELEMENT&gt; | &lt;FEATURE&gt; | &lt;VALUE&gt; | &lt;...&gt; |</dd>


<dt>.column</dt>
<dd>Vector of quotes</dd>


<dt>palette</dt>
<dd>A character vector of colors, or a function such as colorRamp2 (see examples).</dd>


<dt>size</dt>
<dd>A grid::unit object, e.g. unit(2, "cm"). This is the height or width of the annotation depending on the orientation.</dd>


<dt>...</dt>
<dd>The arguments that will be passed to top_annotation or left_annotation of the ComplexHeatmap container</dd>

</dl>

add_point: DEPRECATED. Adds a point annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap`

Description

Usage

Value

Arguments

Details

References

Examples