get_sample_transcript_counts

Get column names either from user or from attributes

This is a tidy implementation for heatmap.  At the
moment it is based on the (great) package 'ComplexHeatmap'.  The goal
of this package is to interface a tidy data frame with this powerful
tool.  Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names).  Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...).  Labels size
adjusted by row and column total number.  Default use of Brewer and
Viridis palettes.

Stefano Mangiola

tidyHeatmap

A Tidy Implementation of Heatmap

Anthony Papenfuss

get_sample_transcript_counts function

<dl><dt>.data</dt>
<dd>A tibble</dd>
<dt>.sample</dt>
<dd>A character name of the sample column</dd>
<dt>.transcript</dt>
<dd>A character name of the transcript/gene column</dd>
<dt>.abundance</dt>
<dd>A character name of the read count column</dd></dl>

Arguments

Get column names either from user or from attributes — get_sample_transcript_counts

<dl>

<dt>.data</dt>
<dd>A tibble</dd>


<dt>.sample</dt>
<dd>A character name of the sample column</dd>


<dt>.transcript</dt>
<dd>A character name of the transcript/gene column</dd>


<dt>.abundance</dt>
<dd>A character name of the read count column</dd>

</dl>

get_sample_transcript_counts: Get column names either from user or from attributes

Description

Usage

Value

Arguments