modcors

Calculate the correlation between modules

Methods and feature set definitions for feature or gene set
enrichment analysis in transcriptional and metabolic profiling data.
Package includes tests for enrichment based on ranked lists of features,
functions for visualisation and multivariate functional analysis. See Zyla et al (2019)
<doi:10.1093/bioinformatics/btz447>.

January Weiner

tmod

Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics

modcors function

<dl><dt>x</dt>
<dd>a data set, with variables (e.g. genes) in rows and samples in columns</dd>
<dt>g</dt>
<dd>a vector of variable idenitifiers which correspond to the definition of modules</dd>
<dt>mset</dt>
<dd>a module set</dd>
<dt>...</dt>
<dd>any further parameters will be passed to the cor() function</dd></dl>

Arguments

Module correlation — modcors

<dl>

<dt>x</dt>
<dd>a data set, with variables (e.g. genes) in rows and samples in columns</dd>


<dt>g</dt>
<dd>a vector of variable idenitifiers which correspond to the definition of modules</dd>


<dt>mset</dt>
<dd>a module set</dd>


<dt>...</dt>
<dd>any further parameters will be passed to the cor() function</dd>

</dl>

modcors: Module correlation

Description

Usage

Value

Arguments

Details