modjaccard

Methods and feature set definitions for feature or gene set
enrichment analysis in transcriptional and metabolic profiling data.
Package includes tests for enrichment based on ranked lists of features,
functions for visualisation and multivariate functional analysis. See Zyla et al (2019)
<doi:10.1093/bioinformatics/btz447>.

January Weiner

tmod

Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics

modjaccard function

<dl><dt>mset</dt>
<dd>set of modules for which to calculate the Jaccard index. If
NULL, the default tmod module set will be used.</dd>
<dt>g</dt>
<dd>a list of genes. If NULL, the list of genes from the mset will be
used.</dd></dl>

Arguments

Jaccard index for modules — modjaccard

<dl>

<dt>mset</dt>
<dd>set of modules for which to calculate the Jaccard index. If
NULL, the default tmod module set will be used.</dd>


<dt>g</dt>
<dd>a list of genes. If NULL, the list of genes from the mset will be
used.</dd>

</dl>

modjaccard: Jaccard index for modules

Description

Usage

Value

Arguments

Details