toxboot (version 0.2.0)

toxbootWriteMongo: Write bootstrap results to mongoDB

Description

toxbootWriteMongo writes results to a mongo database

Usage

toxbootWriteMongo(dat, this_m4id, boot_method, replicates, logc_vect,
  starttime, concvals, datchemresult, datsample)

Arguments

dat

A data.table. Required columns are: logc: numeric, contains concentrations resp: numeric, normalized response values paired with concentrations m3id: numeric, value unique to each row corresponding to an individual concentration and response m4id: numeric, value unique to an aeid/spid pair. Multiple m3ids per m4id aeid: numeric, assay id spid: character, sample ID bmad: numeric, baseline mad. Unique to an aeid.

this_m4id

numeric length 1, m4id to bootstrap. Choice of m4id will determine which rows are selected, and therefore the values of logc, resp, m3id, aeid, spid, and bmad.

boot_method

parameter passed to toxbootReplicates to determine sampling method

replicates

number of bootstrap samples. Default 100

logc_vect

vect

starttime

time

concvals

logical, default is FALSE. If TRUE, dose response samples written to the database as well.

datchemresult

data.table

datsample

data.table used if concval = T

Details

The fitted results are assembled into a json object using jsonlite and written to the mongoDB.

See Also

toxboot