treeman (version 1.1.4)

getPath: Get path between nodes

Description

Return node ids for connecting from to to.

Usage

getPath(tree, from, to)

Arguments

tree

TreeMan object

from

starting node id

to

ending node id

Details

Returns a vector, first id is from to to.

See Also

https://github.com/DomBennett/treeman/wiki/get-methods

Examples

# NOT RUN {
library(treeman)
data(mammals)
# what's the phylogenetic distance from humans to gorillas?
ape_id <- getPrnt(mammals, ids=c('Homo_sapiens', 'Hylobates_concolor'))
pth <- getPath(mammals, from='Homo_sapiens', to='Gorilla_gorilla')
sum(getNdsSlt(mammals, ids=pth, slt_nm='spn'))
# }