yeast


A yeast data set for integrative genomic analysis.


datasets

yeast-data

This R package provides tools for the statistical analysis of integrative genomic data that involve some combination of: genotypes, high-dimensional intermediate traits (e.g., gene expression, protein abundance), and higher-order traits (phenotypes). The package includes functions to: (1) construct global linkage maps between genetic markers and gene expression; (2) analyze multiple-locus linkage (epistasis) for gene expression; (3) quantify the proportion of genome-wide variation explained by each locus and identify eQTL hotspots; (4) estimate pair-wise causal gene regulatory probabilities and construct gene regulatory networks; and (5) identify causal genes for a quantitative trait of interest.

John D Storey

trigger

Transcriptional Regulatory Inference from Genetics of Gene
ExpRession

yeast-data function

The data set contains information on 112 F1 segregants from a yeast genetic cross of BY and RM strains.
The list consists of: 
<code>marker:</code> A 3244 x 112 genotype matrix with marker genotypes in rows and arrays in columns.
<code>exp:</code> A 6216 x 112 gene expression matrix with genes in rows and arrays in columns.
<code>marker.pos:</code> A matrix of marker position information.
<code>exp.pos: </code> A matrix of gene position information. 

Details

A yeast data set for integrative genomic analysis.

yeast-data: A yeast data set for Transcriptional Regulation Inference from Genetics of Gene ExpRession

Description

Arguments

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References