uFTIR (version 0.1.4)

mosaic_compose: Mosaic compose

Description

There are to ways to process a mosaic. One way -which should be the standard- is to do it internally in R by calling first mosaic_info and later mosaic_sam.

The function will write in the path specified in the SpectralInfo object returned by mosaic_info a series of binary files holding the SAM results. In other words, the function does not load the results to R automaticaly. You can call this function to load them back to R in a single object, which will be of class SAM.

Usage

mosaic_compose(
  path = ".",
  clusterlist = NULL,
  nslices = NULL,
  drop_raw = FALSE
)

Arguments

path

Where are the binary files? you can use the 'path' slot of the SpectralInfo instead of enter it manually.

clusterlist

The clusterlist vector that you passed along with the SpectralReference in the call to mosaic_sam.

nslices

If you deal with large mosaics, you might want to load only a few of the sam matches. This argument allows you to define up to which match you want to load to R.

drop_raw

If you are not interested in the angles you can set this argument to TRUE and avoid load them to R.

Value

An object of class SAM.

See Also

mosaic_sam

Examples

# NOT RUN {
x <- mosaic_info(base::system.file("extdata/mosaic.dmt", package = "uFTIR"))
mosaic_sam(x, primpke, n_cores = 1)
y <- mosaic_compose(x@path, primpke@clusterlist)
# }