ulrb (version 0.1.6)

nice: V4-V5 16S rRNA gene amplicons, clean OTU table (N-ICE, 2015)

Description

Table in "wide" format with abundance and taxonomic classification of each OTU.

Usage

nice

Format

nice

A data frame with 524 rows and 17 columns:

ERR2044662, ERR2044663, ERR2044664, ERR2044665, ERR2044666, ERR2044667, ERR2044668, ERR2044669 and ERR2044670

Sample ID

OTU

OTU ID

Domain

Domain level classification of OTU

Phylum

Phylum level classification of OTU

Class

Class level classification of OTU

Order

Order level classification of OTU

Family

Family level classification of OTU

Genus

Genus level classification of OTU

Species

Species level classification of OTU

...

Details

This OTU table was cleaned so that it only includes samples from 16S rRNA amplicon sequencing and no eukaryotes (similarly to Pascoal et al., 2022). Additionally, we added a column with a ID for each OTU.

For details on raw data, see nice_raw

References

• Pascoal, F., Costa, R., Assmy, P., Duarte, P., & Magalhães, C. (2022). Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies. Microbial Ecology, 84(1), 59–72. https://doi.org/10.1007/s00248-021-01821-9

See Also

nice_tidy(), nice_raw, nice_env