cytokine

<p>This gene set was selected in Carbonetto and Stephens
 (2013) from an interrogation of 3,158 derived from 8 publicly available
 pathway databases.</p>

datasets

Fast algorithms for fitting Bayesian variable selection
models and computing Bayes factors, in which the outcome (or
response variable) is modeled using a linear regression or a
logistic regression. The algorithms are based on the variational
approximations described in "Scalable variational inference for
Bayesian variable selection in regression, and its accuracy in
genetic association studies" (P. Carbonetto & M. Stephens, 2012,
<DOI:10.1214/12-BA703>). This software has been applied to large
data sets with over a million variables and thousands of samples.

Peter Carbonetto

varbvs

Large-Scale Bayesian Variable Selection Using Variational
Methods

Matthew Stephens

David Gerard

cytokine function

<p><code>cytokine[i] = 1</code> if SNP i lies within 100 kb of a gene in the "Cytokine
signaling in immune system" gene set, and <code>cytokine[i] = 0</code> otherwise.</p>

cytokine: Cytokine signaling genes SNP annotation.

Description

Usage

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References

Examples