vcdExtra (version 0.8-5)

Alligator: Alligator Food Choice

Description

The Alligator data, from Agresti (2002), comes from a study of the primary food choices of alligators in four Florida lakes. Researchers classified the stomach contents of 219 captured alligators into five categories: Fish (the most common primary food choice), Invertebrate (snails, insects, crayfish, etc.), Reptile (turtles, alligators), Bird, and Other (amphibians, plants, household pets, stones, and other debris).

Usage

data(Alligator)

Format

A frequency data frame with 80 observations on the following 5 variables.

lake

a factor with levels George Hancock Oklawaha Trafford

sex

a factor with levels female male

size

alligator size, a factor with levels large (>2.3m) small (<=2.3m)

food

primary food choice, a factor with levels bird fish invert other reptile

count

cell frequency, a numeric vector

Details

The table contains a fair number of 0 counts.

food is the response variable. fish is the most frequent choice, and often taken as a baseline category in multinomial response models.

Examples

data(Alligator)

# change from frequency data.frame to table
allitable <- xtabs(count ~ lake + sex + size + food, data=Alligator)
# Agresti's Table 7.1
structable(food ~ lake + sex + size, allitable)


plot(allitable, shade=TRUE)

# mutual independence model
mosaic(~ food + lake + size, allitable, shade=TRUE)

# food jointly independent of lake and size
mosaic(~ food + lake + size, allitable, shade=TRUE, 
       expected = ~lake:size + food)

if (require(nnet)) {
	# multinomial logit model
	mod1 <- multinom(food ~ lake + size + sex, data=Alligator, weights=count)
}