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vegan (version 1.6-10)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
121,787
Version
1.6-10
License
GPL2
Maintainer
Jari Oksanen
Last Published
January 29th, 2025
Functions in vegan (1.6-10)
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ordisurf
Smooths Variables and Plots Contours on Ordination.
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
radfit
Rank -- Abundance or Dominance / Diversity Models
envfit
Fits an Environmental Vector or Factor onto an Ordination
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
scores
Get Species or Site Scores from an Ordination
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
specaccum
Species Accumulation Curves
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
ordihull
Add Graphical Items to Ordination Diagrams
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
ordiplot
Alternative plot and identify Functions for Ordination
BCI
Barro Colorado Island Tree Counts
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
read.cep
Reads a CEP (Canoco) data file
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
dune
Vegetation and Environment in Dutch Dune Meadows.
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
procrustes
Procrustes Rotation of Two Configurations
vegdist
Dissimilarity Indices for Community Ecologists
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
specpool
Extrapolated Species Richness in a Species Pool
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
wascores
Weighted Averages Scores for Species
vegemite
Prints a Compact, Ordered Vegetation Table
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
vegan-internal
Internal vegan functions
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
rankindex
Compares Dissimilarity Indices for Gradient Detection
diversity
Ecological Diversity Indices and Rarefaction Species Richness
linestack
Plots One-dimensional Labelled Diagrams without Overwriting Labels
varespec
Vegetation and environment in lichen pastures
decostand
Standardizaton Methods for Community Ecology
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
anosim
Analysis of Similarities
orditorp
Add Text or Points to Ordination Plots
capscale
[Partial] Constrained Analysis of Principal Coordinates
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name