viper (version 1.6.0)

msviperClass: msVIPER class

Description

This function generates an instance of the msviper class from a signature, NES signature and regulon object

Usage

msviperClass(nes, signature, regulon, nullmodel = NULL)

Arguments

nes

Numeric vector of NES values

signature

Numeric vector of gene expression signature

regulon

Instance of class regulon

nullmodel

Optional matrix containing the signatures for the null model

Value

msviper class object

Examples

data(bcellViper, package="bcellViper")
sig <- rowTtest(dset, "description", c("CB", "CC"), "N")$statistic
mra <- msviper(sig, regulon)
mra1 <- msviperClass(mra$es$nes, sig, regulon)
summary(mra1)
plot(mra1)