vpr_autoid_create

Modifies aid and aid mea files based on manual reclassification

An oceanographic data processing package for analyzing and visualizing Video
Plankton Recorder data.  This package was developed at 'Bedford Institute of Oceanography'.
Functions are designed to process automated image classification output and create organized and
easily portable data products.

Emily Chisholm 

vprr

Processing and Visualization of Video Plankton Recorder Data

Emily O'Grady 

Kevin Sorochan dev

Catherine Johnson 

vpr_autoid_create function

<dl><dt>reclassify</dt>
<dd>list of reclassify files (output from vpr_manual_classification())</dd>
<dt>misclassified</dt>
<dd>list misclassify files (output from vpr_manual_classification())</dd>
<dt>basepath</dt>
<dd>base path to auto ID folder eg 'E:/autoID_EC_07032019/'</dd>
<dt>day</dt>
<dd>day identifier for relevant aid &amp; aidmeas files</dd>
<dt>hour</dt>
<dd>hour identifier for relevant aid &amp; aidmeas files</dd>
<dt>mea</dt>
<dd>logical indicating whether or not there are accompanying measurement files to be created<div class="section" id="examples">
<h3>examples</h3></div></dd>
basepath &lt;- 'E:/autoID_EC_07032019/'
day &lt;- '289'
hr &lt;- '08'
day_hour_files &lt;- paste0('d', day, '.h', hr)
misclassified &lt;- list.files(day_hour_files, pattern = 'misclassified_', full.names = TRUE)
reclassify &lt;- list.files(day_hour_files, pattern = 'reclassify_', full.names = TRUE)
vpr_autoid_create(reclassify, misclassified, basepath)
</dl>

Arguments

Author

Modifies aid and aid mea files based on manual reclassification — vpr_autoid_create

<dl>

<dt>reclassify</dt>
<dd>list of reclassify files (output from vpr_manual_classification())</dd>


<dt>misclassified</dt>
<dd>list misclassify files (output from vpr_manual_classification())</dd>


<dt>basepath</dt>
<dd>base path to auto ID folder eg 'E:/autoID_EC_07032019/'</dd>


<dt>day</dt>
<dd>day identifier for relevant aid &amp; aidmeas files</dd>


<dt>hour</dt>
<dd>hour identifier for relevant aid &amp; aidmeas files</dd>


<dt>mea</dt>
<dd>logical indicating whether or not there are accompanying measurement files to be created<div class='section' id='examples'>
<h3>examples</h3>


basepath &lt;- 'E:/autoID_EC_07032019/'
day &lt;- '289'
hr &lt;- '08'
day_hour_files &lt;- paste0('d', day, '.h', hr)
misclassified &lt;- list.files(day_hour_files, pattern = 'misclassified_', full.names = TRUE)
reclassify &lt;- list.files(day_hour_files, pattern = 'reclassify_', full.names = TRUE)
vpr_autoid_create(reclassify, misclassified, basepath)
</div></dd>

</dl>

vpr_autoid_create: Modifies aid and aid mea files based on manual reclassification

Description

Usage

Arguments

examples

Author