vpr_plot_profile

This plot allows a good overview of vertical distribution of individual classification groups along with reference to hydrographic parameters.
Facet wrap is used to create distinct panels for each taxa provided

An oceanographic data processing package for analyzing and visualizing Video
Plankton Recorder data.  This package was developed at 'Bedford Institute of Oceanography'.
Functions are designed to process automated image classification output and create organized and
easily portable data products.

Emily Chisholm 

vprr

Processing and Visualization of Video Plankton Recorder Data

Emily O'Grady 

Kevin Sorochan dev

Catherine Johnson 

vpr_plot_profile function

<dl><dt>taxa_conc_n</dt>
<dd>A VPR data frame with hydrographic and concentration data separated by taxa (from <code>vpr_roi_concentration</code>)</dd>
<dt>taxa_to_plot</dt>
<dd>The specific classification groups which will be plotted, if NULL, will plot all taxa combined</dd>
<dt>plot_conc</dt>
<dd>Logical value whether or not to include a concentration plot (FALSE just shows CTD data)</dd></dl>

Arguments

Plots VPR profiles of temperature, salinity, density, fluorescence and concentration (by classification group) — vpr_plot_profile

<dl>

<dt>taxa_conc_n</dt>
<dd>A VPR data frame with hydrographic and concentration data separated by taxa (from <code>vpr_roi_concentration</code>)</dd>


<dt>taxa_to_plot</dt>
<dd>The specific classification groups which will be plotted, if NULL, will plot all taxa combined</dd>


<dt>plot_conc</dt>
<dd>Logical value whether or not to include a concentration plot (FALSE just shows CTD data)</dd>

</dl>

vpr_plot_profile: Plots VPR profiles of temperature, salinity, density, fluorescence and concentration (by classification group)

Description

Usage

Value

Arguments