genkme

genkus

getsnp

gcose

gcoms


a vector or matrix of numeric values (betas, between 0 and 1)


peaks

genkme - genotype calling with 1d k-meansgenkus - apply genkme to available SNPsgetsnp - grep the rs-numbered probesgcose - calculate between-sample SNP standard errorgcoms - calculate between-sample SNP mean-squared deviation

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

wateRmelon

Illumina 450 methylation array normalization and metrics

genkme function

a vector or matrix of numeric values (betas, between 0 and 1)

genkme - genotype calling with 1d k-means

genkus - apply genkme to available SNPs

getsnp - grep the rs-numbered probes

gcose - calculate between-sample SNP standard error

gcoms - calculate between-sample SNP mean-squared deviation

genkme: Internal functions for genotype-based normalization metrics

Description

Usage

Arguments

Value

Details

References