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wateRmelon (version 1.16.0)

got: Internal functions for Illumina i450 normalization functions

Description

got and fot find the annotation column differentiating type I and type II assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns from IlluminaHumanMethylation450k.db

Usage

got(obj)
fot(x)

Arguments

x
a MethyLumiSet
obj
a MethylSet

Details

got returns a character vector of 'I' and 'II', fot returns the index of the relevant column. pop returns a data frame

References

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)