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wgsea (version 1.8)

Wilcoxon based gene set enrichment analysis

Description

Non parametric alternative to Kolmogorov-Smirnov based standard GSEA testing.

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Version

Install

install.packages('wgsea')

Monthly Downloads

55

Version

1.8

License

GPL

Maintainer

Chris Wallace

Last Published

December 5th, 2016

Functions in wgsea (1.8)

genperms

Generate permutations of a phenotype vector
Z.value

Calculate a Z score from a Wilcoxon statistic and a set of random Wilcoxon statistics
pairtest

Generate p values for each SNP for case-control comparisons.
wgsea-package

Gene set enrichment analysis using Wilcoxon rank tests
varplot

Plot theoretical and estimated variances of Wstar
wilcoxon

Wilcoxon test statistic, with optional weights.