plotEIC

plotEIC,xcmsRaw-method

object


    m/z range for EIC. Uses the full m/z range by default.
  

mzrange


    retention time range for EIC. Uses the full retention time range by default.
  

rtrange

scanrange


    Number of decimal places of title m/z values in the eic plot.
  

mzdec


    Speficies how the data should be plotted (by default as a line).
  

type


    If the EIC should be added to an existing plot.
  


    Additional parameters passed to the plotting function
    (e.g. <code>col</code> etc).
  


    Plot extracted ion chromatogram for m/z values of interest. The raw data is used in contrast to  <code><a rd-options="" href="/link/plotChrom?package=xcms&version=1.48.0" data-mini-rdoc="xcms::plotChrom">plotChrom</a></code> which uses data from the profile matrix.


methods

plotEIC-methods

Framework for processing and visualization of
chromatographically separated and single-spectra mass spectral data. Imports from
AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for
high-throughput, untargeted analyte profiling.

Steffen Neumann

xcms

LC/MS and GC/MS Data Analysis

plotEIC-methods function

<dl>
<dt>object = "xcmsRaw"</dt><dd>
  <code>
    plotEIC(object, mzrange = numeric(), rtrange = numeric(),
    scanrange = numeric(), mzdec=2, type="l", add=FALSE, ...)
  </code>
</dd> </dl>

Methods


    Plot extracted ion chromatogram for m/z values of interest. The raw data is used in contrast to  <code><a rd-options='' href='plotChrom'>plotChrom</a></code> which uses data from the profile matrix.


plotEIC-methods: Plot extracted ion chromatograms for specified m/z range

Description

Arguments

Value

Methods

See Also