xcmsSource-class


  This virtual class provides an implementation-independent way to load
  mass spectrometer data from various sources for use in an
  <code>xcmsRaw</code> object. Subclasses can be defined to
  enable data to be loaded from user-specified sources. The virtual
  class <code>xcmsFileSource</code> is included out of the box
  which contains a file name as a character string.<p></p><p>  When implementing child classes of <code>xcmsSource</code>, a corresponding
  <code><a rd-options="" href="/link/loadRaw-methods?package=xcms&version=1.48.0" data-mini-rdoc="xcms::loadRaw-methods">loadRaw-methods</a></code> method must be provided which accepts
  the <code>xcmsSource</code> child class and returns a list in the format
  described in <code><a rd-options="" href="/link/loadRaw-methods?package=xcms&version=1.48.0" data-mini-rdoc="xcms::loadRaw-methods">loadRaw-methods</a></code>.
</p>

classes

Framework for processing and visualization of
chromatographically separated and single-spectra mass spectral data. Imports from
AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for
high-throughput, untargeted analyte profiling.

Steffen Neumann

xcms

LC/MS and GC/MS Data Analysis

xcmsSource-class function

A virtual Class: No objects may be created from it.

Objects from the Class


  This virtual class provides an implementation-independent way to load
  mass spectrometer data from various sources for use in an
  <code>xcmsRaw</code> object. Subclasses can be defined to
  enable data to be loaded from user-specified sources. The virtual
  class <code>xcmsFileSource</code> is included out of the box
  which contains a file name as a character string.

  When implementing child classes of <code>xcmsSource</code>, a corresponding
  <code><a rd-options='' href='loadRaw-methods'>loadRaw-methods</a></code> method must be provided which accepts
  the <code>xcmsSource</code> child class and returns a list in the format
  described in <code><a rd-options='' href='loadRaw-methods'>loadRaw-methods</a></code>.


xcmsSource-class: Virtual class for raw data sources

Description

Arguments

Objects from the Class

See Also