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xoi (version 0.72)
Tools for Analyzing Crossover Interference
Description
Analysis of crossover interference in experimental crosses, particularly regarding the gamma model. See, for example, Broman and Weber (2000)
.
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Version
Version
0.72
0.70
0.69-2
0.68-3
0.67-4
0.66-9
0.61-1
0.59-2
Install
install.packages('xoi')
Monthly Downloads
183
Version
0.72
License
GPL-3
Issues
0
Pull Requests
0
Stars
4
Forks
3
Repository
https://github.com/kbroman/xoi
Maintainer
Karl Broman
Last Published
March 22nd, 2023
Functions in xoi (0.72)
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fitStahl
Fit Stahl model
fitGamma
Fit Gamma model
xoiversion
Installed version of R/xoi
xoprob
Distribution of number of crossovers
intensity
Estimate intensity function
location.given.one
Location of crossover given there is one
firstden
Distance to a crossover
stahlLoglik
Calculate log likelihood for Stahl model
ioden
Distance between crossovers
stahlcoi
Coincidence function for the Stahl model
joint.given.two
Crossover locations given there are two
gammacoi
Coincidence function for the gamma model
recrate2scanone
Convert recrate to scanone format
simStahl
Simulate crossover locations under the Stahl model
est.coi.um
Estimate the coincidence as a function of micron distance
est.coi
Estimate the coincidence function
coincidence
Estimate coincidence function
kfunc
estimate Ripley's K function
convertxoloc
Convert format of crossover locations data
est.recrate
Estimate recombination rate
first.given.two
Location of first crossover given there are two
bssbsb
BSS/BSB backcross data
chiasma
Estimate chiasma distribution from crossover counts
find.breaks
Estimate crossover locations
distance.given.two
Distance between crossovers given there are two
countxo
Estimate number of crossovers
