rOpenSci
Author or maintainer of the following packages:
alm
An R interface to the open source article level metrics platform
AntWeb
A complete programmatic interface to the AntWeb database from theCalifornia Academy of Scien...
aRxiv
An interface to the API for arXiv, a repository of
electronic preprints for computer science, mathem...
binomen
Includes functions for working with taxonomic data,
including functions for combining, separating, a...
bold
A programmatic interface to the Web Service methods provided by
Bold Systems for genetic 'barcode' d...
brranching
Includes methods for fetching 'phylogenies' from a variety
of sources, currently includes 'Phylomati...
chromer
A programmatic interface to the Chromosome Counts Database
(http://ccdb.tau.ac.il/). This package is...
ckanr
Client for 'CKAN' 'API' (http://ckan.org/). Includes interface
to 'CKAN' 'APIs' for search, list, sh...
clifro
CliFlo is a web portal to the New Zealand National Climate
Database and provides public access (via ...
crul
A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is...
dvn
Provides access to Dataverse version 3 APIs, enabling access to archived data (and metadata), and th...
ecoengine
The ecoengine provides access to more than 5 million georeferenced
specimen records from the Univers...
ecoretriever
Provides an R interface to the EcoData Retriever
(http://ecodataretriever.org/) via the EcoData Retr...
elastic
Connect to 'Elasticsearch', a 'NoSQL' database built on the 'Java'
Virtual Machine. Interacts with t...
EML
Parse and serialize Ecological Metadata Language ('EML', see
etseed
Client to interact with the 'etcd' 'key-value' data store
. Function...
europepmc
An R Client for the Europe PubMed Central RESTful Web Service. It
gives access to both metadata on l...
finch
Parse and create Darwin Core (
fulltext
Provides a single interface to many sources of full text
'scholarly' data, including 'Biomed Central...
gender
Encodes gender based on names and dates of birth using historical
datasets. By using these datasets ...
geojson
Classes for 'GeoJSON' to make working with 'GeoJSON' easier.
geojsonio
Convert data to 'geoJSON' or 'topoJSON' from various R classes,
including vectors, lists, data frame...
geonames
Code for querying the web service at www.geonames.org
gistr
Work with 'GitHub' 'gists' from 'R' (e.g., http://en.wikipedia.org/
wiki/GitHub#Gist, https://help.g...
git2r
Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Prov...
graphql
Bindings to the 'libgraphqlparser' C++ library. Currently parses
GraphQL and exports the AST in JSON...
historydata
These sample data sets are intended for historians
learning R. They include population, institutiona...
hunspell
A spell checker and morphological analyzer library designed for
languages with rich morphology and c...
internetarchive
Search the Internet Archive, retrieve metadata, and download
files.
jqr
Client for 'jq', a JSON processor (
jsonld
JSON-LD is a light-weight syntax for expressing linked data. It is primarily
intended for web-based ...
lawn
Client for 'Turfjs' () for
'geospatial' analysis. The package revolves around usi...
magick
Bindings to ImageMagick: the most comprehensive open-source image
processing library available. Supp...
mapr
Utilities for visualizing species occurrence data. Includes
functions to visualize occurrence data f...
natserv
Interface to 'NatureServe' ().
Includes methods to get data, image metad...
neotoma
Access paleoecological datasets from the Neotoma Paleoecological
Database using the published API (h...
oai
A general purpose client to work with any 'OAI-PMH'
(Open Archives Initiative Protocol for 'Metadata...
originr
Get species origin data (whether species is native/invasive) from the
following sources on the web: ...
paleobioDB
Includes 19 functions to wrap each endpoint of
the PaleobioDB API, plus 8 functions to visualize and...
pangaear
Tools to interact with the 'Pangaea' Database (), including functions for s...
pdftools
Utilities based on libpoppler for extracting text,
fonts, attachments and metadata from a pdf file. ...
pleiades
Provides a set of functions for interacting with the
'Pleiades' 'API', including getting status data...
prism
Allows users to access the Oregon State Prism climate data. Using the web service API data can easil...
rAltmetric
Programmatic interface to the Altmetric.com API.
rAvis
Interface to database.
It provides means to download data filtered by spec...
rbhl
Interface to 'Biodiversity' 'Heritage' Library ('BHL') 'API'
methods. 'BHL' is a repository of 'digi...
rbison
Interface to the 'USGS' 'BISON' 'API', a 'database' for
species occurrence data on the web. Data com...
rcrossref
Client for various 'CrossRef' 'APIs', including 'metadata' search
with their old and newer search 'A...
RCryptsy
Basic access to market infomation from the public API for the Crypto-Currency exchange Cryptsy.
rdryad
Interface to the API for Dryad
rebird
A programmatic client for the eBird database, including functions
for searching for bird observation...
rentrez
Provides an R interact to the NCBI's EUtils API allowing
users to search databases like genbank and ...
Reol
An R interface to the Encyclopedia of Life API. Includes functions for downloading and extracting in...
rerddap
General purpose R client for 'ERDDAP' servers. Includes
functions to search for 'datasets', get summ...
rfigshare
An interface to 'figshare' (http://figshare.com), a scientific repository to archive and assign 'DOI...
rfishbase
A programmatic interface to http://www.fishbase.org, re-written based on an accompanying 'RESTful' A...
rfisheries
A programmatic interface to openfisheries.org. This package is
part of the rOpenSci suite (http://ro...
rgauges
This package provides functions to interact with the
Gaug.es API. Gaug.es is a web analytics service...
rgbif
A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information ...
rglobi
A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI). ...
rinat
A programmatic interface to theAPI provided by the iNaturalist website.
rjsonapi
Consumer for APIs that Follow the JSON API Specification
(
rnbn
Access to data held by the National Biodiversity Network (NBN, www.nbn.org.uk). The NBN acts as a da...
RNeXML
Provides access to phyloinformatic data in NeXML format. The
package should add new functionality t...
rnoaa
Client for many 'NOAA' data sources including the 'NCDC'
climate 'API' at http://www.ncdc.noaa.gov/c...
rotl
An interface to the 'Open Tree of Life' API to retrieve phylogenetic
trees, information about studie...
rplos
A programmatic interface to the 'SOLR' based
search 'API' (http://api.plos.org/) provided by the Pub...
RSelenium
The RSelenium package provides a set of R bindings for theSelenium 2.0 WebDriver using the J...
rsnps
A programmatic interface to various SNP datasets
on the web: openSNP, NBCI's dbSNP database, and Bro...
rvertnet
Retrieve, map and summarize data from the 'VertNet.org' archives.
Functions allow searching by many ...
rWBclimate
This package will download model predictions from 15 different global circulation models in 20 year ...
solr
This package provides a set of functions for querying and parsingdata from Solr endpoints (l...
spocc
A programmatic interface to many species occurrence data sources,
including 'GBIF', 'USGS's' 'BISON'...
spoccutils
Utilities for use with 'spocc'. Includes functions to
clean occurrence data, find and remove duplica...
taxize
Taxonomic information from around the web. This package
interacts with a suite of web 'APIs' for tax...
traits
Species trait data from many different sources, including
sequence data from 'NCBI', plant trait dat...
treebase
Interface to the API for 'TreeBASE' (http://treebase.org)
from 'R.' 'TreeBASE' is a repository of us...
USAboundaries
This package provides spatial objects with the boundaries of
states or counties in the United States...
worrms
Client for World Register of Marine Species
(
xslt
An extension for the 'xml2' package to transform XML documents
by applying an XSL stylesheet.
Impact Percentile
92
Number of Packages
80
Package Downloads
24,616
Citations
1