BCRANKresult-class: Class "BCRANKresult"
Description
Holds the results from running
bcrank. Contains a number of
BCRANKsearch-class object,
one for each restart of the bcrank search.Slots
fname:- the name of the fasta file used for running bcrank.
toplist:- a list of
BCRANKsearch-class objects,
ranked by their scores. funCall:- the function call that was made to bcrank.
nrSeqs:- number of sequences in the fasta input file.
restarts:- number of restarts used in the bcrank
search.
Methods
- fname
signature(object = "BCRANKmatch"): Returns the
fasta file name.- toplist
signature(object = "BCRANKmatch", i=NULL): If
i is NULL, returns a data frame containing consensus and
score for the results for each restart of the bcrank
search. Otherwise, the i'th BCRANKsearch-class object in
the toplist is returned.