gRbase package - RDocumentation

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To install gRbase:

if (!require("BiocManager")) install.packages("BiocManager")
BiocManager::install("gRbase")

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Version

Install

install.packages('gRbase')

Monthly Downloads

3,076

Version

2.0.1

License

GPL (>= 2)

Maintainer

Søren Højsgaard

Last Published

November 29th, 2023

Functions in gRbase (2.0.1)

api-tabNew

Create multidimensional arrays

data-dietox

Growth curves of pigs in a 3x3 factorial experiment

api-pct-operations

Array algebra

zzz-hllm

Old: Hierarchical log-linear models

zzz-gModel

Old: Class "gModel" - graphical models

zzz-gRfit

Old: Class "gRfit" - fitted graphical models

Check if object is array

api-tabX_

Table operations implemented in c++

Low level table cell operations implemented in c++

api_tabSlice

Array slices

api-tabX

Interface - operations on multidimensional arrays.

api-parray

Representation of and operations on multidimensional arrays

The Nutrimouse Dataset

data-ashtrees

Crown dieback in ash trees

api-tabDist

Marginalize and condition in multidimensional array.

data-mildew

Mildew fungus

data-milkcomp

Milk composition data

gmwr_book

Functions from Graphical Modelling with R book

api-cell

Table cell operations.

data-carcass

Lean meat contents of 344 pig carcasses

data-breastcancer

Gene expression signatures for p53 mutation status in 250 breast cancer samples

graph-clique

Get cliques of an undirected graph

fastcombn

Generate All Combinations of n Elements Taken m at a Time

data-mathmark

Mathematics marks for students

graph-coerce-api

API for coercing graph representations

data-chestSim

Simulated data from the Chest Clinic example

gRbase

The package `gRbase': summary information

ug2dag

Coerce between undirected and directed graphs when possible

graph_coerce_list

Coercion of graphs represented as lists

graph-gcproperties

Properties of a generating class (for defining a graph).

graph_query

Query a graph

array-simulate

Simulate data from array.

graph_topo_sort

Topological sort of vertices in directed acyclic graph

graph-mcs

Maximum cardinality search on undirected graph.

graph-rip

Create RIP ordering of the cliques of an undirected graph; create junction tree.

graph-mpd

Maximal prime subgraph decomposition

graph-randomdag

Random directed acyclic graph

data_cad

Coronary artery disease data

compareModels

Generic function for model comparison

cov2pcor

Partial correlation (matrix)

downstream-aliases

Downstream aliases

graph_iplot

Function for plotting graphs using the 'igraph' package.

graph_is

Check properties of graphs.

graph-coerce

Graph coercion

dag2chol

Create regression matrix matrix from DAG A DAG can be represented as a triangular matrix of regression coefficients.

data-reinis

Risk factors for coronary heart disease.

graph-triangulate

Triangulation of an undirected graph

set-operations

Suite of set operations

data-wine

Chemical composition of wine

grbase_generics

Compile and propagate functions

internal

Internal functions for the gRbase package

graph-create

Create undirected and directed graphs

graph-edgeList

Find edges in a graph and edges not in a graph.

graph-min-triangulate

Minimal triangulation of an undirected graph

graph-moralize

Moralize a directed acyclic graph

graph_vpar

List of vertices and their parents for graph.

grbase-utilities

gRbase utilities

api-array-07

Array operations (2007)

all_pairs

Create all possible pairs

zzz-gmData

Old: Class "gmData" graphical meta data

zzz-validVarTypes

Old: Admissible variable types in gmData objects