#Note that Plink files "10SNPs.ped", "10SNPs.map" and also "Locations.txt"
#are included in the data folder of the OriGen package with ".txt" appended to the Plink files.
#Please remove ".txt" and navigate to the appropriate location
#before testing the following commands.
#Note that this was done to allow inclusion of the test data in the package.
## Not run: trials3=ConvertUnknownPEDData("10SNPs","Locations.txt",""10SNPs"")
## Not run: str(trials3)
MaxGridLength=30
RhoParameter=10
## Not run: trials4=FitOriGenModelFindUnknowns(trials3$DataArray,trials3$SampleCoordinates,
# trials3$UnknownData[1:2,],MaxGridLength,RhoParameter)## End(Not run)
## Not run: PlotUnknownHeatMap(trials4,UnknownNumber=1,MaskWater=TRUE)
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