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edge (version 2.4.2)

DGEExact-class: differential expression of Digital Gene Expression data - class

Description

A list-based S4 class for for storing results of a differential expression analysis for DGE data.

Arguments

Methods

This class inherits directly from class list, so DGEExact objects can be manipulated as if they were ordinary lists. However they can also be treated as if they were matrices for the purposes of subsetting.

The dimensions, row names and column names of a DGEExact object are defined by those of table, see dim.DGEExact or dimnames.DGEExact.

DGEExact objects can be subsetted, see subsetting.

DGEExact objects also have a show method so that printing produces a compact summary of their contents.

See Also

Other classes defined in edgeR are DGEList-class, DGEGLM-class, DGELRT-class, TopTags-class