list
, so DGEList
objects can be manipulated as if they were ordinary lists.
However they can also be treated as if they were matrices for the purposes of subsetting.The dimensions, row names and column names of a DGEList
object are defined by those of counts
, see dim.DGEList
or dimnames.DGEList
.
DGEList
objects can be subsetted, see subsetting
.
DGEList
objects also have a show
method so that printing produces a compact summary of their contents.
DGEList
constructs DGEList objects.
Other classes defined in edgeR are DGEExact-class
, DGEGLM-class
, DGELRT-class
, TopTags-class