dynamicGraph (version 0.2.2.6)

DynamicGraph: DEPRECATED: Simple interface to dynamicGraph

Description

A simple interface to dynamicGraph in the sense that the graph should not be given as an object as to dynamicGraphMain. Here vertices can be specified by a vector of text strings with names, and/or edges by pairs of the indices of the vertices.

The function can also be used to add models and views to an existing dynamicGraph.

The interface is deprecated: Use the method dg on an object of class dg.simple.graph-class instead, or the methods addModel, addView, replaceModel, or replaceView.

Usage

DynamicGraph(names = character(), types = character(),  from = vector(), to = vector(), edge.list = list(NULL),  labels = names, edge.types = character(),  blocks = list(NULL), block.tree = list(NULL), oriented = NA,  factors = list(NULL), texts = character(),  extra.from = vector(), extra.to = vector(),  extra.edge.list = list(NULL),  object = NULL, viewType = "Simple",  frameModels = NULL, frameViews = NULL, graphWindow = NULL,  addModel = FALSE, addView = FALSE, overwrite = FALSE,  returnNewMaster = FALSE, redraw = FALSE,  control = dg.control(...), ...)

Arguments

names

See vertex.names of dg.simple.graph-class.

types

See dg.simple.graph-class.

from

See dg.simple.graph-class.

to

See dg.simple.graph-class.

edge.types

See dg.simple.graph-class.

edge.list

See dg.simple.graph-class.

labels

See dg.simple.graph-class.

blocks

See dg.simple.graph-class.

block.tree

See dg.simple.graph-class.

oriented

See dg.simple.graph-class.

factors

See dg.simple.graph-class.

texts

See dg.simple.graph-class.

extra.from

See dg.simple.graph-class.

extra.to

See dg.simple.graph-class.

extra.edge.list

See dg.simple.graph-class.

viewType

See dg.simple.graph-class.

object

The model object, or NULL, see dg.Model-class.

frameModels

An object of class DynamicGraph-class. frameModels is the object for a dataset and the models on that dataset.

frameViews

An object of class DynamicGraphModel-class. frameViews is the object for a model and the views of that model.

graphWindow

An object of class DynamicGraphView-class. graphWindow is the object for a view of a model.

addModel

Logical, if addModel then a model is added to the argument frameModels, and a view of the model is drawn. If the argument overwrite is TRUE and the argument graphWindow is given then the model of graphWindow is replaced by the model argument object. If the argument overwrite is TRUE and the argument frameViews is given then the model of frame\-Views is replaced by the model argument object.

addView

Logical, if addView then a view of type set by the argument viewType for the model of the argument frameViews is added.

overwrite

Logical, see the argument addModel.

redraw

Logical. If TRUE then the dynamicGraph of the arguments frameModels is 'redrawn'. New instances of the windows are made.

returnNewMaster

Logical. Alternative implementation of addModel, using the code of redraw. As redraw, but the windows of frameModels exists, and a new model is added.

control

Options for DynamicGraph and dynamicGraphMain, see dg.control.

...

Additional arguments to dynamicGraphMain.

Value

The returned value from dynamicGraphMain.

Details

After converting the arguments for the graph first to an object of class dg.simple.graph-class then to an object of class dg.graph-class the function dynamicGraphMain does all the work.

The list of objects can be exported from dynamicGraphMain, also after modifying the graph.

Examples

require(tcltk); require(dynamicGraph)

# Example 1:

W <- dg(as(new("dg.simple.graph", vertex.names = 1:5), "dg.graph"),
        control = dg.control(title = "Very simple"))

# Example 2:

W <- dg(new("dg.simple.graph", from = 1:4, to = c(2:4, 1)), 
        control = dg.control(title = "Simply edges"))

# Example 3:

V.Types <- c("Discrete", "Ordinal", "Discrete",
             "Continuous", "Discrete", "Continuous")

V.Names  <- c("Sex", "Age", "Eye", "FEV", "Hair", "Shosize")
V.Labels <- paste(V.Names, 1:6, sep ="/")

From <- c(1, 2, 3, 4, 5, 6)
To   <- c(2, 3, 4, 5, 6, 1)

W <- dg(new("dg.simple.graph", vertex.names = V.Names, types = V.Types,
            labels = V.Labels, from = From, to = To), 
        control = dg.control(title = "With labels (extraVertices)"))


# Example 4: Oriented (cyclic) edges, without causal structure:

W <- dg(new("dg.simple.graph", vertex.names = V.Names, types = V.Types,
            labels = V.Labels, from = From, to = To, oriented = TRUE),
        control = dg.control(title = "Oriented edges"))


# Example 5: A factor graph:

Factors <- list(c(1, 2, 3, 4), c(3, 4, 5), c(4, 5, 6))

W <- dg(new("dg.simple.graph", vertex.names = V.Names, types = V.Types,
          labels = V.Labels, factors = Factors, viewType = "Factor"),
        control = dg.control(title = "Factorgraph", namesOnEdges = FALSE))


# Example 6: Edges with more than two vertices:

EdgeList <- list(c(1, 2, 3, 4), c(3, 4, 5), c(4, 5, 6))

W <- dg(new("dg.simple.graph", vertex.names = V.Names, types = V.Types,
          labels = V.Labels, edge.list = EdgeList),
        control = dg.control(title = "Multiple edges", namesOnEdges = FALSE))

W