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VGAM (version 0.8-7)

Vector Generalized Linear and Additive Models

Description

Vector generalized linear and additive models, and associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This package fits many models and distribution by maximum likelihood estimation (MLE) or penalized MLE. Also fits constrained ordination models in ecology.

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Version

Install

install.packages('VGAM')

Monthly Downloads

42,087

Version

0.8-7

License

GPL-2

Maintainer

Last Published

April 13th, 2012

Functions in VGAM (0.8-7)

The AA-Aa-aa Blood Group System

The G1G2G3 Blood Group System

The Benini Distribution

Returns Important Matrices etc. of a RR-VGLM Object

Computes Model Coefficients and Quantities

betabinomial.ab

Beta-binomial Distribution Family Function

Extract Model Coefficients for VLM Objects

The Pareto Distribution

Vector Generalized Linear and Additive Models

The Two-parameter Beta Distribution Family Function

The AB-Ab-aB-ab2 Blood Group System

Data on Back Pain Prognosis, from Anderson (1984)

Bivariate Gamma: McKay's Distribution

The Beta-Binomial Distribution

Akaike's Information Criterion

Link functions for VGLM/VGAM/etc. families

Binomial Family Function

Returns Important Matrices etc. of a QO Object

Generalized Gamma distribution family function

DeLury's Method for Population Size Estimation

The Two-parameter Beta Distribution Family Function

Create a Survival Object

Redirects the user to cqo

The Inverse Gaussian Distribution

The Dagum Distribution

Binomial Logistic Regression by Asymmetric Maximum Likelihood Estimation

Auckland University Undergraduate Counts Data

Exponential Link Function

Exponential Regression by Asymmetric Maximum Likelihood Estimation

The Exponential Geometric Distribution

Bivariate Probit Model (Family Function)

Biplot of Constrained Regression Models

Benford's Distribution

Crashes on New Zealand Roads in 2009

The Laplace Distribution

Quasi-variances Preprocessing Function

Asymmetric Least Squares Quantile Regression

Bivariate Logistic Distribution Family Function

The Borel-Tanner Distribution

Beta-geometric Distribution Family Function

The Beta-Geometric Distribution

The Birnbaum-Saunders Distribution

Beta Distribution of the Second Kind

Bivariate Binary Regression with an Odds Ratio

The ABO Blood Group System

The Beta-Prime Distribution

Bivariate Logistic Distribution

Model Calibrations

Asymmetric Laplace Distribution Family Functions

Cardioid Distribution

Ordinal Regression with Adjacent Categories Probabilities

Coef.rrvglm-class

Class ``Coef.rrvglm''

Coef.qrrvglm-class

Class ``Coef.qrrvglm''

Inputting Data to fit a Bradley Terry Model

The AB-Ab-aB-ab Blood Group System

The MNSs Blood Group System

CommonVGAMffArguments

Common VGAM family function Arguments

Mark the Baseline of Row and Column on a Matrix data

The Beta-Normal Distribution

Fitting Constrained Additive Ordination (CAO)

Chi-squared Distribution

Koenker's Distribution Family Function

Laplace Distribution

Beta-binomial Distribution Family Function

calibrate-methods

Calibration for Constrained Regression Models

Bradley Terry Model With Ties

Felix Distribution Family Function

Folded Square Root Link Function

Loglinear Model for Two Binary Responses

Response variable extracted

Cauchit Link Function

Chinese Population in New Zealand 1867--2001 Data

Exponential Geometric Distribution Family Function

Extract Model Constrained/Canonical Coefficients

Freund's (1961) Bivariate Extension of the Exponential Distribution

Fitting a Dirichlet-Multinomial Distribution

Body Mass Index of New Zealand Adults Data

calibrate.qrrvglm

Calibration for CQO, UQO and CAO models

Ali-Mikhail-Haq Distribution Distribution Family Function

calibrate.qrrvglm.control

Control function for CQO/UQO/CAO calibration

Breathlessness and Wheeze Amongst Coalminers Data

Poisson Regression by Asymmetric Maximum Likelihood Estimation

Borel-Tanner Distribution Family Function

F Distribution Family Function

Bivariate normal distribution

Complementary Log-log Link Function

Chest Pain in NZ Adults Data

The Generalized Rayleigh Distribution

GARMA (Generalized Autoregressive Moving-Average) Models

Cardioid Distribution Family Function

Farlie-Gumbel-Morgenstern's Bivariate Distribution Family Function

Exponential Poisson Distribution Family Function

Frank's Bivariate Distribution Family Function

Double Exponential Binomial Distribution Family Function

Constraint Matrices

Control Function for RR-VGAMs (CAO)

Low-iron Rat Teratology Data

get.smart.prediction

Retrieves ``.smart.prediction''

Ordinal Regression with Continuation Ratios

Density Plot for LMS Quantile Regression

Cauchy Distribution Family Function

Expectiles-Exponential

Expectiles of the Exponential Distribution

The Laplace Distribution

Lerch Phi Function

The Fisk Distribution

Harvard University International Enrollments

Fisher's Z Link Function

The Frechet Distribution

Invparalogistic

The Inverse Paralogistic Distribution

Residual Degrees-of-Freedom

Ordinal Regression with Cumulative Probabilities

Generalized Beta Distribution Family Function

Generalized Beta Distribution of the Second Kind

The Exponential Poisson Distribution

Expectiles-Uniform

Expectiles of the Uniform Distribution

Fitting a Dirichlet Distribution

Logistic Distribution Family Function

Logarithmic Distribution

Estimated Crime in 2009 in USA

Expectiles-Normal

Expectiles of the Normal Distribution

Predict Method for a CQO fit

Gumbel Distribution Family Function

Haight's Zeta Family Function

Harvard University Degrees Conferred by Student Ethnicity

Folded Normal Distribution Family Function

Negative binomial canonical link function

negbinomial.size

Negative Binomial Distribution Family Function With Known Size

Latent Variable Plot

Test For a Smart Object

Logit Link Function

Censored Poisson Family Function

Paralogistic Distribution Family Function

Retrieve One Component of ``.smart.prediction''

Huber's least favourable distribution family function

Censored Normal Distribution

The Folded-Normal Distribution

Fitting Constrained Quadratic Ordination (CQO)

2-parameter Gamma Distribution

Cumulative Distribution Function for LMS Quantile Regression

The Generalized Extreme Value Distribution

Row-Column Association Models including Goodman's RC Association Model

Exponential Logarithmic Distribution Family Function

Generalized Rayleigh Distribution Family Function

Quantile Plot for Gumbel Regression

Redirects the user to rrvglm

Marginal effects for the multinomial logit and cumulative models

Erlang Distribution

Levy Distribution Family Function

Fitted Values of a VLM object

Loglinear Model for Three Binary Responses

Multinomial Logit Model

Leipnik Distribution Family Function

The Gumbel Distribution

Huggins (1991) Capture-recapture Model

Creates a Matrix of Appropriate Dimension

Univariate Normal Distribution

Univariate Normal Distribution with Double Censoring

Inverse Gaussian Distribution Family Function

The Maxwell Distribution

The Generalized Pareto Distribution

Huggins (1991) Capture-recapture Model Family Function (approximation only)

Gamma Hyperbola Bivariate Distribution

Positive-Poisson Distribution

2-parameter Gamma Distribution

Gamma-Ordinal Link Function

Generalized Pareto Distribution Family Function

McCullagh (1989) Distribution Family Function

Exponentiated Exponential Distribution

The Generalized Gamma Distribution

Fitting a Dirichlet-Multinomial Distribution

Exponentiated Exponential Distribution

Mean Excess Plot

Positive Binomial Distribution Family Function

Inverse Binomial Distribution Family Function

Toxicity trial for insects

Identity Link Function

Generalized Poisson distribution

The Rice Distribution

The Matched Binomial Distribution Family Function

LMS Quantile Regression with a Box-Cox transformation to a Gamma Distribution

The Inverse Lomax Distribution

Geometric Distribution

The Log-Gamma Distribution

Probability Plots for Categorical Data Analysis

1-parameter Gamma Distribution

Gumbel's Type I Bivariate Distribution Family Function

Logarithmic Distribution

Hyperbolic Secant Distribution Family Function

Mixture of Two Poisson Distributions

Ordinal Poisson Family Function

The Dirichlet distribution

Rhobit Link Function

2008 Summer Olympic Final Medal Count Data

Oxford Temperature Data

Kumaraswamy Distribution Family Function

Huber's least favourable distribution

qrrvglm.control

Control function for QRR-VGLMs (CQO)

The Lambert W function

Harvard University Numbers of Ladder Faculty by School and Ethnicity

Generalized Extreme Value Distribution Family Function

Hat Values and Regression Deletion Diagnostics

Log link function with an offset

Acute Myelogenous Leukemia Survival Data

Expectiles-Koenker

Expectiles/Quantiles of the Koenker Distribution

Index from Array to Matrix

Log-log Link Function

Slash Distribution Family Function

Reciprocal link function

Constrained Quadratic Ordination

The Singh-Maddala Distribution

Nakagami Distribution

Student t Distribution

Waitakere Ranges Data

Complementary-log Link Function

Gaussian (normal) Family Function

Lomax Distribution Family Function

Return Level Plot for GEV Fits

Poisson Family Function

Rice Distribution Family Function

Trajectory Plot

2008 World Fly Fishing Championships (Number of captures) Data

The Log-Laplace Distribution

Perspective plot for QRR-VGLMs

Control function for vgam

General Electric and Westinghouse Data

Poisson-Ordinal Link Function

The Pareto(IV/III/II) Distributions

Latent Variable Plot for QO models

Construct the Model Frame of a VLM Object

Poisson-points-on-a-plane/volume Distances Distribution

Hunting Spider Data

Plackett's Bivariate Distribution

Quasi-Poisson Family Function

Minimizing the L-q norm Family Function

Positive Poisson Distribution Family Function

Hunua Ranges Data

Default VGAM Plotting

plotqtplot.lmscreg

Quantile Plot for LMS Quantile Regression

Negative Binomial-Ordinal Link Function

Yule-Simon Family Function

Mixture of Two Univariate Normal Distributions

Negative Binomial Distribution Family Function

Zero-Altered Binomial Distribution

plotdeplot.lmscreg

Density Plot for LMS Quantile Regression

Lognormal Distribution

model.matrixvlm

Construct the Design Matrix of a VLM Object

Power Link Function

Class ``rrvglm''

Positive Negative Binomial Distribution Family Function

Univariate Skew-Normal Distribution Family Function

Zero-Altered Geometric Distribution

notdocumentedyet

Undocumented and Internally Used Functions and Classes

Grain Prices Data in USA

Hypergeometric Family Function

Prentice (1974) Log-gamma Distribution

LMS Quantile/Expectile Regression with a Box-Cox Transformation to Normality

New Zealand Marital Data.

Undergraduate Statistics Students Lifestyle Questionnaire

Likelihood Ratio Test of Nested Models

Quantile Plot for LMS Quantile Regression

Log link function

Michaelis-Menten Model

Positive-Binomial Distribution

Pareto and Truncated Pareto Distribution Family Functions

The Positive-Normal Distribution

Positive-Negative Binomial Distribution

Positive-geometric Distribution

Nested reduced-rank autoregressive models for multiple time series

The Two-stage Sequential Binomial Distribution Family Function

von Mises Distribution Family Function

Mixture of Two Exponential Distributions

Yeo-Johnson Transformation

Positive Normal Distribution Family Function

Latent Variables

Rutherford-Geiger Polonium Data

Venice Maximum Sea Levels Data

Proportional Odds Model for Ordinal Regression

Skellam Distribution Family Function

plotvgam.control

Control Function for plotvgam()

Adds a List to the End of the List ``.smart.prediction''

The zero Argument in VGAM Family Functions

The Triangle Distribution

rrvglm.optim.control

Control function for rrvglm() calling optim()

Zero-Altered Geometric Distribution

Simplex Distribution Family Function

Zero-Inflated Binomial Distribution

Upper Record Values from a 1-parameter Exponential Distribution

Zipf Distribution Family Function

Morgenstern's Bivariate Distribution Family Function

The Rayleigh Distribution

Upper Record Values from a Univariate Normal Distribution

Main effects plot for a Row-Column Association Model (RCAM)

smart.expression

S Expression for Smart Functions

Short-tailed Symmetric Distribution Family Function

Prior and Working Weights of a VGLM fit

Fitting Unconstrained Quadratic Ordination (UQO)

Probit Link Function

The Tobit Distribution

The Truncated Pareto Distribution

Vector cubic smoothing spline

2008 World Fly Fishing Championships (Team results) Data

Ordinal Regression with Stopping Ratios

Fitting Vector Generalized Linear Models

Defining smooths in VGAM formulae

Zero-Altered Binomial Distribution

Control function for vglm

Point System for the 2008 World Fly Fishing Championships

Cross-sectional Data from the New Zealand Population

Control function for rrvglm

quasibinomialff

Quasi-Binomial Family Function

University California Berkeley Graduate Admissions

Control Function for UQO models

Zero-Inflated Geometric Distribution Family Function

Smart Prediction Setup

Wald Distribution Family Function

Zero-Inflated Negative Binomial Distribution Family Function

2008 World Fly Fishing Championships Data

Zero-Altered Negative Binomial Distribution

Yule-Simon Distribution

Zero-Altered Poisson Distribution

Zeta Distribution Family Function

Fitting Vector Generalized Additive Models

undocumented-methods

Undocumented Methods Functions

Fitting Reduced-Rank Vector Generalized Linear Models (RR-VGLMs)

Weibull Distribution Family Function

Exchangeable bivariate cloglog odds-ratio model from a zero-inflated Poisson distribution

Zero-Altered Negative Binomial Distribution

Reciprocal Inverse Gaussian distribution

The Zeta Distribution

Smart Prediction

Zero-Inflated Poisson Distribution Family Function

Zero-Inflated Binomial Distribution Family Function

Determine What Mode the Smart Prediction is In

Toxoplasmosis Data

Skew-Normal Distribution

Trajectory plot for QRR-VGLMs

Class ``vglmff''

Cleans Up After Smart Prediction

Zero-Inflated Geometric Distribution

Zero-Inflated Poisson Distribution (Yip (1988) algorithm)

Zero-Altered Poisson Distribution

Zero-Inflated Poisson Distribution

Constrained (Canonical) Coefficients

Censored Gumbel Distribution

The Exponential Logarithmic Distribution

Exponential Distribution

LMS Quantile Regression with a Yeo-Johnson Transformation to Normality

Log-Laplace and Logit-Laplace Distribution Family Functions

Latent Variable Plot for RR-VGLMs

Log-gamma Distribution Family Function

Model Diagnostic Plots for QRR-VGLMs

The Poisson Lognormal Distribution

Predict Method for a VGLM fit

Pneumoconiosis in Coalminers Data

2008 World Fly Fishing Championships (Individual results) Data

Zero-Inflated Negative Binomial Distribution