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SPA3G (version 1.0)

SPA3G: R package for the method of Li and Cui (2012)

Description

The package implements the model-based kernel machine method for detecting gene-centric gene-gene interactions of Li and Cui (2012).

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Version

Install

install.packages('SPA3G')

Monthly Downloads

17

Version

1.0

License

GPL (>= 3)

Maintainer

ORPHANED

Last Published

March 23rd, 2012

Functions in SPA3G (1.0)

Score.Test.Overall

Implement the overall genetic effect test for H0:
SPA

run SPA
KERNEL

Calculate Kernel Matrix
WEIGHT_maf

Returns minor allele frequency based weights
TRACE

Returns trace of a square matrix
PROJECT

Column-wise Mean Centered
Score.Test.Interact

Implement the gene-centric gene-gene interaction effect test for H0:
SPA3G-package

SPA3G
TT

Returns the trace of the product of two matrices
SPA.example

An example data set