isomiRs (version 1.0.3)

counts: Accessors for the count matrix of a IsomirDataSeq object.

Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each isomiR, and one column for each sample. The normalized matrix can be obtained by using the parameter norm=TRUE.

Usage

counts.IsomirDataSeq(object, norm = FALSE)
"counts"(object, norm = FALSE)
"counts"(object) <- value

Arguments

object

a IsomirDataSeq object

norm

TRUE return log2-normalized counts

value

an integer matrix

Value

matrix with raw or normalized count data.

Examples

data(mirData)
head(counts(mirData))