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RDAVIDWebService (version 1.10.0)

An R Package for retrieving data from DAVID into R objects using Web Services API.

Description

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

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Version

Version

1.10.0

License

GPL (>=2)

Maintainer

Cristobal Fresno

Last Published

February 15th, 2017

Functions in RDAVIDWebService (1.10.0)

DAVIDCluster-class

class "DAVIDCluster
funChart1

DAVID's website Functional Annotation Chart example files
categories

categories for the different DAVIDWebService package class objects
geneCluster1

DAVID's website gene/term cluster report example files
genes

genes for the different DAVIDWebService package class objects.
ids

ids for the different DAVIDWebService package class objects
setEmail

Accessor methods for DAVIDWebService class
is.connected

Methods to manipulate DAVID website
DAVIDGenes

High level constructors for DAVIDWebService package's classes.
summary

Basic summary for DAVIDWebService package classes.
DAVIDWebService-class

Main class to connect to DAVID Web Service
demoList1

DAVID's website demoList1 example id files
species

Methods for DAVIDGenes class object
annotationTable1

DAVID's website functional annotation table example files
DAVIDResult-class

class "DAVIDResult
getGeneCategoriesReport

Obtain DAVID website reports
subset

Methods for DAVIDFunctionalAnnotationTable class object
type

Getters for DAVIDResult object
show

Basic console output
DAVIDFunctionalAnnotationChart-class

class "DAVIDFunctionalAnnotationChart
plot2D

Visualization of biological relationships
terms

Methods for DAVIDGODag class object
DAVIDGenes-class

class "DAVIDGenes
annotationSummary1

DAVID's website annotation summary example files
DAVIDFunctionalAnnotationTable-class

class "DAVIDFunctionalAnnotationTable
geneList1

DAVID's website gene list example files
DAVIDWebService-package

An R Package for retrieving data from DAVID into R objects using Web Services
DAVIDTermCluster-class

class "DAVIDTermCluster
DAVIDGeneCluster-class

class "DAVIDGeneCluster
DAVIDGODag-class

class "DAVIDGODag
cluster

Methods for DAVIDCluster class object