geneList1: DAVID's website gene list example files
Description
These datasets correspond to the reports obtained using
Show Gene List in the Database for Annotation,
Visualization and Integrated Discovery (DAVID) website,
using as input file the ones provided for demo purposes
(demoList1 or demoList2) with default options.
Usage
data(geneList1)
data(geneList2)
Format
geneList1/2 are data.frame for demoList1/2 input ids,
respectively, with the following columns.
- ID
- character with the Gene List ID present in DAVID knowledge base, in
the submitted type. If more than one ids map to the same DAVID ID, the
record is a comma separated character.
- Name
- character with the name of the gene as seen in DAVID knowledge
base, in a comma separated fashion (if more than one ID maps to the same
DAVID ID).
- Species
- factor with the name of the Specie.
References
- The Database for Annotation,
Visualization and Integrated Discovery
(david.abcc.ncifcrf.gov)
- Huang, D. W.;
Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.;
Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C.;
Lempicki, R. A. DAVID Bioinformatics Resources: expanded
annotation database and novel algorithms to better
extract biology from large gene lists. Nucleic Acids Res,
Laboratory of Immunopathogenesis and Bioinformatics,
SAIC-Frederick, Inc., National Cancer Institute at
Frederick, MD 21702, USA., 2007, 35, W169-W175
-
DAVID Help page
http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#E3