qtlnet (version 1.5.4)

generate.qtl: Generate QTLs ane phenotypes from cross object

Description

Generate QTLs ane phenotype data for individual examples from cross. These are utility routines to illustrate the examples. They are not meant for users per se.

Usage

generate.qtl.markers(cross, n.phe, nqtl = 3)
generate.qtl.pheno(name, cross, bp, bq, stdev, allqtl,
    burnin = 2000, geno)

Arguments

cross

object of class cross; see read.cross

name

character string for example name

bp

vector or matrix of coefficients for dependencies between phenotypes; see cyclic and acyclic examples

bq

vector or matrix of coefficients for QTL effects on phenotypes; see cyclic and acyclic examples

stdev

vector of standard deviations per phenotype

allqtl

list of objects of class qtl produced by generate.qtl.sample

burnin

number of burnin cycles for MCMC; default is 2000

geno

genotypes at markers, typically extracted with pull.geno

n.phe

number of phenotypes

nqtl

number of QTL

See Also

acyclic, cyclica, cyclicb, cyclicc

Examples

# NOT RUN {
example(acyclic)
example(cyclica)
example(cyclicb)
example(cyclicc)
# }